rs49017571 SNP Detail

Summary

• ID
  rs49017571
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151811557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACTGTTC ATCAGTTCCT
  AATGGCTTCT GTCTTTCTTT AAGAGAGGAA AAGGGCCGTT ATTCATCCTT GAATCACTAG
  TGCCCAGACT GCCAGGCTCA GCAAAGGCAA CGAATAAATA AACGAGGCCT GGGAGTGCAG
  CATCATGGTC AGCTTCCCGC ATTTGTGCCA GGTCAGAAGG GAGATTGTTT CAAATCCTGT
  W
  AGTTCTTTAA ATCCTTCAGA AACTTGATTG CAGGCTATTT ATACCAATTT AATATTAGCG
  TTGAACTAGC TTCTTTTCAT TATGAGCTAA TTTTAATTGA CCTATTTAAT TAAACAGACT
  ATGCACATCT GTGGATTTTT AATGTTTATA TTTGAATAGC TTTTTCTCAG CTTCCCAGAT
  AGATCACAGG CTACCCTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136100800	ENSMUSSNP6489628	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321028047	CHEV_3_151768884	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49017571					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151811557 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			203 bp distal
Cpgi13940	CpG island 13940			610 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			328 bp distal
Rr587453	regulatory region 587453			372 bp distal
Rr587454	regulatory region 587454			within coordinates
Tssr36159	transcription start site region 36159			1277 bp downstream