rs49016147 SNP Detail

Summary

• ID
  rs49016147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG AAAGGCAACC GCTGGGTGCC
  R
  GTGGGCCTTA TCCAGTTCCC CAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147620270	ENSMUSSNP7129119	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321367536	CHEV_4_137352997	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49016147					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524393 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	698 bp upstream
Cpgi15139	CpG island 15139	380 bp distal
Rr602724	regulatory region 602724	709 bp distal
Rr602725	regulatory region 602725	753 bp distal
Rr602726	regulatory region 602726	208 bp distal
Rr602727	regulatory region 602727	618 bp distal
Tssr1350	transcription start site region 1350	786 bp upstream
Tssr44149	transcription start site region 44149	757 bp upstream
Tssr44150	transcription start site region 44150	721 bp upstream