rs49015995 SNP Detail

Summary

• ID
  rs49015995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATTCTCT CTTACTGACC CCCCCGCTCT ACACCACCAT
  TATATACCAG TTTATTATTC CATAAATACA ATGAATAACA CTTTATAAAA TATAATAATT
  Y
  ACATTACCAA GGAGATTATT ACCAGATCAT ATCGGTAGAA TGACTATCAT TCTAAAATTT
  AGGGTTTTTT TCCCCCCATC AACAGAACAT TTGAAGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148092306	ENSMUSSNP4043246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320584276	CHEV_2_156942749	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49015995					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958933 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	within coordinates
Rr568437	regulatory region 568437	114 bp proximal
Rr568438	regulatory region 568438	515 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron