rs49015664 SNP Detail

Summary

• ID
  rs49015664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGTGG TACCCATTTC
  AGAGTTCTAA GATCTTTCCC TTTTGTAGGA CCAGCCTAAG ATCAACCGCC AACAAGAAGT
  TCCTGTTTTC CCAGCCTAGA CCCTGGACCC TTTCCTACCC AGTAGCGCCA CAGGATTCTA
  ACCACAACTA ATGCAAGACC TGTCCCCAGG TACACCCAGG GTGGGTCACC CAGCAGGACC
  Y
  CTCCCTGGGT TGGAACAGGA AACTGTCTTC ACAGCCCACA TGCTTCTACT TGGTTTATCT
  GAGGGTGGAC CTGTAGGTGG CCGCTACAAC TGAAGAGCAA AACCCCTGAC TGTATTTAAC
  TCCTGTCACC TGCATCCCAC TTGTCAAAAG GATACAGACT AAGAGATGTC CCCCGCTTAG
  CTGGAGGCAG CTGGAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147540841	ENSMUSSNP734590	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321351086	CHEV_4_134734834	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49015664					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906230 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	10 bp proximal
Rr601943	regulatory region 601943	217 bp proximal
Runx3	runt related transcription factor 3	929 bp downstream