rs49013264 SNP Detail

Summary

• ID
  rs49013264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTGGAC GCTCACCCTA
  GCCACCCCGG CTTCTCCTGG AGTTGAATCA ACTTGACATG CATCCATTGG TGTCTACTGT
  GTGCTGGACT CCAGGGCAGG CAGAAAGCTG AGGGTCGTGT CGCCTCTGGC CCTGGAAGGG
  AAGGTGAGCC ATGCTTTCGG GCTTTGTCCT AAGCTGTAGA CATGCTCTGG GTCCAGACCT
  R
  CCCCCTGTGA TGCCTTGACT CTGCCTCCTG CCTGGCAACA GTATGGTTGC CCACCCCCAG
  AGGCTGCCAG GAAGGAGGAA CTGAAGAGGT CACATGACAG AAAGCATGCT GGTAGCTGAC
  AATTGCTGGT TCTCACCTCC CTCACCCCTA TCCCAGACAC CAGCTCCTCT GTGTTGCTTA
  GCTCAGTGAT GACACAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148366693	ENSMUSSNP2980521	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320628578	CHEV_2_178368361	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49013264					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275449 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	1102 bp upstream
Rr572441	regulatory region 572441	189 bp distal
Rr572442	regulatory region 572442	508 bp proximal