rs49010995 SNP Detail

Summary

• ID
  rs49010995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176651245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TTGCCCTCAC CAGCAATGGG
  W
  TTACGTGTGT GCTCCGCCAC ATGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146341233	ENSMUSSNP4337414	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320157870	CHEV_1_178753810	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49010995					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176651245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423912	regulatory region 423912			1408 bp distal
Rr423913	regulatory region 423913			379 bp distal
Rr423914	regulatory region 423914			293 bp proximal
Rr423915	regulatory region 423915			1473 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant