rs49009483 SNP Detail

Summary

• ID
  rs49009483
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCCATCC TGGGTTCTGA AGCCAGGGTA AGGAAAGGGA
  GACAGGACCT GAAGTCAAGA AAGGGGCTTT CCAGCTGATG GCTGAATAGC CCCCACCACA
  W
  GGGAAGGAGA GGCTGGAGGA CTCTAGAGCC CAGCAGTTTA AAGCCAACCT GGGCAACAGT
  GAGACTTTGT CCAAAAATGA GGGGGTCAGG GCTCAGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147992009	ENSMUSSNP5715900	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321416974	CHEV_4_147463101	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49009483					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173449 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	961 bp upstream
Cpgi15288	CpG island 15288	441 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	972 bp distal
Rr604584	regulatory region 604584	471 bp distal
Tssr44579	transcription start site region 44579	965 bp upstream
Tssr44580	transcription start site region 44580	936 bp upstream
Tssr44581	transcription start site region 44581	923 bp upstream
Tssr44582	transcription start site region 44582	189 bp downstream
Tssr44583	transcription start site region 44583	217 bp downstream