rs49007778 SNP Detail

Summary

• ID
  rs49007778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30528859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTCTC AACACTTGCT
  GCTTTTAATA CGTCCTGTTG AACCTTCCTT GGTAAGTCAT CTGACAGGAC ATGGACCAAC
  AATTAAGCTT CAACAGGCCC TGCGGTGAGG CCTATTATGA TCGGACTCAT CATCAAAGCA
  CCAGAGTAAT GAAAACGCAA TTATAAAGAG GTCAATAAAG TTGGTAGCCT TAGGTGAACT
  S
  AAAATATCCT GGTAGAAATG TGTGTTTTTA CATTAAAATA ACTGTTCATA AGTCCCTAAG
  GTATCACTGG GACAAAAATA AGAATTCACA GTATCATGTC TCAGGCTGTC TACAAGTGAC
  AGTTTTAACA CATACTGTGT TGTACTTAAA TCATCAGCTA CAGTGTGATG TGAAACTCCT
  TAACATAGAC GCATAACTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52363825	NES15389152	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49007778					SNP	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363825	NES15389152	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30528859 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	342 bp downstream
Tssr113087	transcription start site region 113087	203 bp upstream