rs49007374 SNP Detail

Summary

• ID
  rs49007374
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689057 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C CCACCAACAA TGGAGGAGTG TTCCTCTTTC TCCACATCCT
  TGCCAGCATC TGCTGTCGCC TGAGTTTTTT TTATCTTAGC CATTCTGACT TATGTGAGGT
  A
  GAATCTCAGA GTTGTTTTGA TTTGCATTTC CCTAATGACT GAGAATATTG AACATTTCTT
  TAGGGGTTTC TCAGCCATTC GAGTTTCCTC AGTTGAAAAT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132168096	ENSMUSSNP5555511	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49007374					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689057 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1848 bp proximal