rs49005721 SNP Detail

Summary

• ID
  rs49005721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152496535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTATC CTTTCCTATT
  TCTTTGTACC AAAATTAAGC CCATCTATGG TAGATGCTGT TCTAACTTGT GAAAGATATT
  TTGTAAACAC AGTGCAAGAT ACAGCCTTGA AGCCGTGACC AGAATCCAGC TCTGCTCTGT
  GGCACCAGCT TCACTGCTTC ACAGTTTCAC TCAGAACCTC AGGGCCTTAA CTGCTGTCTG
  Y
  GGCCTGCATA GCTGCTGGCC AGCACACCTC AGGGGAGCCC GGGCCCGCAC GCCAACTGCT
  GGCCAGCACA CCTCTGCACG GCTGCTGGTC AGCACCTCAG GGGTTGCGGG GCTCCCGTAC
  CCCTTCCTTA TGTGCAGAAA TCTTTACTGT CTTGGACATG TGCTGTGAAA CACTTGGCTT
  TGTTTAACTG TGTGTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61101174	NES16612843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49005721					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101174	NES16612843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152496535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1002 bp proximal