rs49004475 SNP Detail

Summary

• ID
  rs49004475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146734446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTCAG TTAACCTGGA
  GCTTTGAGAG CTCTTAGAGA CTGAGCCAGC ACTGAGGGCT ATATTAAGAA TCAAATGTCA
  ACTATGCTCT CCCTACTTTT GTGGGCATGT TTTGCCACTA TGTGAAGATA TTCTTACTTG
  GTAAGTGGTG ACTAGACCTG CTCAGTGTCA GTAAACTCCT GTCGTTATAG AAACAAGCGG
  R
  TCCCAGTCCT TCTGAGAAAC GAGACAACTG GCAGTGATGC ACGAGTGGTG ACTTTTCATC
  CACCCATTAC CTTTTGTGCA CCACGACCCT TTCTTCCATC TAAGCACCTA CGTACTAAAT
  ACCAATATGG TGAAGTCAGG ACAAGTCCTC GATCTACTTC ACCCTCACTT CCCCAAGTGA
  CCAAAAGAGA ATAAGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096816	NES16602375	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49004475					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096816	NES16602375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146734446 () rs orientation: forward

Symbol	Name	Function Class
Rr587113	regulatory region 587113	1218 bp proximal
Rr587114	regulatory region 587114	1590 bp proximal