rs49003666 SNP Detail

Summary

• ID
  rs49003666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92197212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCAGCA GGTCCCTCCC
  GCCACCCTAC TTTGAGTAGA TCTGAATAAT GTCCACTCTC ACAGCACTGC AGCCACCCTG
  CCATCTCTCA TGGGACCACT GCAGCAGCCT CCCTCCTGCC CTTCCTTTCT GACCTCTCCC
  TGTGCCAACT CAGTCAGACA TACCCCTCCT CTGTTCAGCA GCCCCAGAGG ATCTGACAGG
  Y
  TCAGGAGAAA TGACCTTTTT CAGTATTAGG ATGCTCTTGC AGGCTTAGGA CCCTGGCTTG
  ACCAAATGAC TTCTTTCCCA CTCTTTCTCG GCGGTTCCGG CAGATAGACT CGGGCTTATT
  CACAAAAAGG CAGCAGGCAG AAGCAGATGA GGTCCCTTAG GCCTGAGTCC AGAGCTACAA
  CAGTATCACT TCTGCTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60911641	NES16220138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49003666					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60911641	NES16220138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92197212 () rs orientation: forward

Symbol	Name	Function Class
Rr634622	regulatory region 634622	342 bp distal
Rr634623	regulatory region 634623	569 bp distal
Rr634624	regulatory region 634624	345 bp distal
Rr634625	regulatory region 634625	1421 bp proximal