rs49002498 SNP Detail

Summary

• ID
  rs49002498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118407037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGGGAAC TTCTGTGTAA
  GGGTGTCCCT AAAAGTTCCT TAGCAGCCTC TGTTTGGAGC TATGCTGGCT CCTATAGGCT
  TATGCAGCGC CCTTCCCCCG TGCTGAACAC AAACCTTCCG GGTGGGTGTG AATCTGGACG
  GCCCTTCAGA CTAAGCTCCT TGGGCTCCAT CCTGGCATCC AAACCTGCCT AGGTTTTTTG
  Y
  CTGAAGTCTG AGCTTAGCGC TAACCCAAGA CAAATAGTGT CAAGGCAGCT CACCCGTCGG
  TTCGGCTGAT TTATTTGACA CAAATAAGCT CGCTGACCTG ATTTAGCCTT GCGGGGGACC
  ACAGACCAAG TCAGGCATGA TCTTAAGGCT CTTGCTATTT GGCTGCAGCC AACGCGGCTC
  AGTGCTGGTG GCTGACGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60831464	NES16022140	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49002498					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831464	NES16022140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118407037 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	271 bp upstream
Rr618848	regulatory region 618848	within coordinates
Rr618849	regulatory region 618849	222 bp proximal
Rr618850	regulatory region 618850	293 bp proximal