rs49000658 SNP Detail

Summary

• ID
  rs49000658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102277001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGGAGG GGCAAAGTAG
  CACCCAAGGT CAGATGATCC ATGACTCATA AATAGCTTCT AATATCTGAG GAGCCTGCAA
  AATTCCACAG CTCATCGCTC CCCGAAACTA ACGGGCCATG TGAAAAACAG AACTACAGTC
  TCCCCGTAAG GAAGAGGGAG GTACCTATGC TAACTCTACC ACAGAGGACA TCTTCAAAAA
  K
  AGATGCCCTA GTGTGGCGAC CATGTTGTCT AGGTATCTCT TGCCAGACTC ATTCACTCCT
  CTCCAGCCCG TAGAAAGTGT TCTTATAACC ACAATGAAAA GGCTGGATCA TGGGAGGATT
  CAAAGCGTCT GGGGATTTGA CTCAGCTGAG GAATGATACT CCACTTTAAT AAATCCCCGT
  TGTGGTTGCT GAGTGCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147112223	ENSMUSSNP5105378	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320437721	CHEV_2_102286813	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49000658					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102277001 () rs orientation: forward

Symbol	Name	Function Class
Rr561693	regulatory region 561693	1168 bp proximal