rs49000464 SNP Detail

Summary

• ID
  rs49000464
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8632947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAACATGGTG ACTTCATGAC CACACCCAAA ACCATCAGGA
  AATCAAGATC TATGGTTTCC TGTCTCAAAA GGGGAAGGGT TAAAACTGAA TACCAATAAC
  A
  CAGTAATAAA ACTAGTAACC ATACATCTCT TCCGAGAGGG TCATACGCAT CTCTTTCCTG
  TATGCTGGGA AGTCGAAATA AATAACAGTC CATCCCAAAA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132972921	ENSMUSSNP6236766	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49000464					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8632947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			670 bp downstream
Rr626420	regulatory region 626420			1400 bp distal
Rr626421	regulatory region 626421			523 bp distal