rs48999656 SNP Detail

Summary

• ID
  rs48999656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTCAC ACACTGCAGG
  TCGGAACTTG TGCCAGCCTC TCTGCCTTCA GCTCAGCCAG GCCCCCCTGC AGCCCTCAGT
  GGGCGCTCTT AAACAACCAC AGAGTTGCTC CTGACCCAGG GACTGCCAGG GTCTCTGCCG
  GGTCCTCACC CCATTGGGCC CCTCTACCCT TCTTCTGTCT TGTTTTTCAG TACTCTTAAG
  K
  TTCCTGCGAG GCTGTTTTGC CTTTGATGGA GTGAGTTTGG GCTTAGCAGG AGTCTGTGGG
  GAAGCTCAGA CTCCCTCTGG CTCTGCCCAG TGTCCCCTGC CTAGAGGGGA CTCTGACCAT
  CTGGCCTGGC TCTATTTTGT CCTCTAAGGG GCTTCCTGGA ATTCCAGGCT CAGAAGGGCC
  ATTCTGCCCC AGTCTGGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147676633	ENSMUSSNP6254449	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48999656					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363392 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			232 bp proximal
Rr603269	regulatory region 603269			485 bp proximal
Rr603270	regulatory region 603270			1833 bp proximal