rs48997006 SNP Detail

Summary

• ID
  rs48997006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39766449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAACCT GTGGCCTTTA
  TTCACATGTT TTATAAATAT TGTGGTTATT GTATCTAAGG CTGTGAAATG AGCTCAGCAG
  AGATTCTGTC TTCTCACTCT CCTGCCTCCT CCTACTTCTC TCTGGGCCAT CAGCTCAGGG
  TTGCTGTGTT TGGATTGGCA TCTCTCAAGA GTAGAGAGTG AGTGTCTGTA TAACTGACGG
  Y
  TGATTGAACT TATTTCTGGG AGAATGTCTG GTCAAGTCCA CCATGATTTT GCAAGCAAGC
  TGTTCGTTCC TGTTAGGTTG CTTTCCAATT ACAGGACCTT CACAGACTTC TGAAAGATGT
  CCCTCATATA CCTGGCTTGA ATATATTTCT TTAAAAATAA AGATTATATG ATGAAGTGAA
  CTGTGAATTT CCTAAAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134852998	ENSMUSSNP7146237	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48997006					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39766449 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	930 bp upstream
Rr575767	regulatory region 575767	440 bp proximal
Rr575768	regulatory region 575768	941 bp proximal
Rr575769	regulatory region 575769	1816 bp proximal