rs48996392 SNP Detail

Summary

• ID
  rs48996392
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147602122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCCAATTGC TTCATCAGGG ATGTTAAAAC TCACACACCA
  GGCAAATGAA AATTAGGTAG CTTGAGGAGC TCTTAACAGT CTGGAAATTT GCAACCAGGT
  G
  GACAGTCTCT CTTGAGTCTC ATTGCACATG ATCAGTGGAT TTAGGCCTCA CTGCTTAATG
  ACTGAAAGAT CATGAATCAA ATCAGAAGTT ACTTTCAGGT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147966747	ENSMUSSNP1546281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48996392					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147602122 () rs orientation: forward

Symbol	Name	Function Class
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1968 bp upstream
Rr604494	regulatory region 604494	1320 bp proximal