rs48990599 SNP Detail

Summary

• ID
  rs48990599
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131591955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGCATCA CAATTCAGGA AACCTAAACA TTGATTATAT
  TTCTATTATT AGAGAACACC TTTTCTATTT TCTTTCCCCT CCTTTGAAGT GCTTATTCAT
  T
  TTGATTTTGT TGCTTAGATA TAAACGTTTC TCACCACTAA ATATTATGAG TAAAATAAAT
  ACTGCCTTTG ATTTTTCCTT CTGTCTTAAA CCATTTGAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135905970	ENSMUSSNP5002766	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48990599					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131591955 () rs orientation: forward

Symbol	Name	Function Class
Gm65547	predicted gene, 65547	1347 bp downstream
Rr585388	regulatory region 585388	390 bp proximal
Rr585389	regulatory region 585389	467 bp proximal