rs48990596 SNP Detail

Summary

• ID
  rs48990596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51918510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCTAC CTCATACTTT
  CATGAAATGG ACTAAGGACA AATAATGGGG AGGTAGCAGG CTTTACTGAA ACCCAGATGT
  GTTTCAAACA CAGGCTAGAA TGAAGGCTGA CTCTGCCGGC CTGTGCCTGC CAAACCCTGT
  AATGTCTGTA AACTAAAATG TGCGCTGAGT GAAAAGCTAC CAAGCAAGTA ATCACACTCA
  S
  TCTCTGAGAC AGATCCACAA GGTGCCACTG CTGTGTGTGT GTGGGGGGGG GGGGGGGGCA
  AAGGCTAATT AAGCATAACT GTGACGTAGT CATTCTTTCC CACAGACTCA CTCCGGGAAC
  ACATAAAAGC ATAAGCCTAT GTGGCATGTA CAGAGCAGAG CTCCACTCTG TCACAGGTCA
  CCTGGCCCTC GAGTGTCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411338	NES15908547	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48990596					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411338	NES15908547	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51918510 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	1521 bp distal
Rr576437	regulatory region 576437	within coordinates
Tssr876	transcription start site region 876	1868 bp upstream
Tssr33242	transcription start site region 33242	1994 bp upstream
Tssr33243	transcription start site region 33243	1932 bp upstream
Tssr33244	transcription start site region 33244	1908 bp upstream
Tssr33245	transcription start site region 33245	1849 bp upstream