rs48990496 SNP Detail

Summary

• ID
  rs48990496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38842996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACCTATA ACATACCTAC
  TGAAGCTGGG ATGTGAAAAT GTGGTATTGA ATAGGAAGTT GGGTCAGAAG GCTTAAAATG
  TACCGTTTGG ACCAAAGAAG AGGTGCTTTT TCTTCTTTCT TTTTTAATCA TGGGATAAAC
  AACATGAGAT CTTACTAATG TCATCCTTTA AATCTCAACT GTACAAATGA GTCATGAAAA
  M
  CTGAGTGAAG GACTCAAGCC TGTGCCCCTC GCTTCATTCA CCTGCAGAGT GAATGATGTC
  ATTAGTGTCT CCTAGTTACC AGGAAGTAGC AGTACGTGCA GCATCCACAG AGGATGCCAT
  AGCAACAAGG CTATTACAAA GGATGCCACA GAGACTACTG CAAGGATTCC ACAGAGGCTA
  TGTACAGATT TATTGTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60388737	NES15898908	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	C		C	A	C		C
ss320723081	CHEV_3_38687769	CHEVERUD	SCREENING_POP	f	SNP						A				C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48990496					SNP	A	C	A	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388737	NES15898908	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38842996 () rs orientation: forward

Symbol	Name	Function Class
Rr575703	regulatory region 575703	within coordinates