rs48986841 SNP Detail

Summary

• ID
  rs48986841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29123366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGTGA GGCTGAAGAA
  CTTGTCTCTG AGTGTTTATT AGAATCAAGC AACATGGTAT GAGGCTAGAT GGTACTAAAT
  GGGAGAAAAG GTAGAAGGAA GAGCAGAGAG AACACCAAAA CATAAAATAC AAATATGATG
  TGGTTTGGAA ATGGCTTGGT TTATCTTGGC ATAAAGGACC ATTTGAAGGC ATGACCCAAT
  W
  TTGAATCGTT TCCCTCCAGT TGGATGTGTG TCTTCTAACA CCCACACTAC CATTGCTGAC
  TGTACCCATT ACTTATAAGT CTTGTTCTCT CTGGGATAGA TTATATTCCC TTCTGTCCTA
  ATACCTTAAC ACTTGTTATT TCTTCTGCCT GCAAGACTTG TACCCTAGAG TCAGCCTGAC
  TGCTTTCTTC TCAGAACTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381960	NES15888752	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48986841					SNP	A	T	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381960	NES15888752	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29123366 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	321 bp distal