rs48982450 SNP Detail

Summary

• ID
  rs48982450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129977532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG ACTGCCTGTG AGTAAGAGAG
  Y
  TCTGGTTCTG GGGGTACGGG AGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147459439	ENSMUSSNP2515194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321316964	CHEV_4_129760983	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48982450					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129977532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm70130	predicted gene, 70130			1681 bp upstream
Rr600432	regulatory region 600432			1692 bp distal
Rr600433	regulatory region 600433			1204 bp distal
Rr600434	regulatory region 600434			294 bp distal
Rr600435	regulatory region 600435			934 bp proximal