rs48981670 SNP Detail

Summary

• ID
  rs48981670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAACA CACTTCCTGG
  GATGGGATGA GACCAATCTG CAGAGTTCTT ACTCTGCAAG CATGGGGCCC TGAGGTCAAT
  CCCCTGGAAC CCAGCTTTAA AAGGGAAAGG TGATTCAGTG GTTAAGAGCA CTGGCTGCTC
  TTCCACAGGA CCCAGGTTCA ATTCCCAGCA CCCACATAGC TGCTTGCAAT TGCCTGAAAC
  Y
  CCAGACCCAG GAGATCCGAA GCCTCTTCTG ATCATTGAGG GCACCAGGCA CACATGTGGT
  GTGCATACAC ACATGCAGGC AAAACACTCA CTCACATGCC TATATGTACA TGCATGCACA
  CACATGCACA CTCACATGCA CACGTGCACA CACGAGCATC CACAGGCACA TGCACACATG
  CTTGTGTGCA CATACCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147553107	ENSMUSSNP1705434	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48981670					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621601 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1104 bp upstream
Rr602181	regulatory region 602181	1141 bp distal
Rr602182	regulatory region 602182	825 bp distal
Rr602183	regulatory region 602183	701 bp proximal
Rr602184	regulatory region 602184	1115 bp proximal
Rr602185	regulatory region 602185	1681 bp proximal
Tssr39650	transcription start site region 39650	890 bp upstream
Tssr39651	transcription start site region 39651	1094 bp upstream
Tssr39652	transcription start site region 39652	1124 bp upstream