rs48980236 SNP Detail

Summary

• ID
  rs48980236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151811556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAACTGTT CATCAGTTCC
  TAATGGCTTC TGTCTTTCTT TAAGAGAGGA AAAGGGCCGT TATTCATCCT TGAATCACTA
  GTGCCCAGAC TGCCAGGCTC AGCAAAGGCA ACGAATAAAT AAACGAGGCC TGGGAGTGCA
  GCATCATGGT CAGCTTCCCG CATTTGTGCC AGGTCAGAAG GGAGATTGTT TCAAATCCTG
  Y
  TAGTTCTTTA AATCCTTCAG AAACTTGATT GCAGGCTATT TATACCAATT TAATATTAGC
  GTTGAACTAG CTTCTTTTCA TTATGAGCTA ATTTTAATTG ACCTATTTAA TTAAACAGAC
  TATGCACATC TGTGGATTTT TAATGTTTAT ATTTGAATAG CTTTTTCTCA GCTTCCCAGA
  TAGATCACAG GCTACCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136100799	ENSMUSSNP6652158	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321028046	CHEV_3_151768883	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48980236					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151811556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			327 bp distal
Rr587453	regulatory region 587453			371 bp distal
Rr587454	regulatory region 587454			within coordinates
Tssr36159	transcription start site region 36159			1278 bp downstream