rs48977993 SNP Detail

Summary

• ID
  rs48977993
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148689053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATATAAC ACATGCTTAA
  GAAAACCTAC ACATCAGATC CGGGTGACTA ACTGAAGTCT AATAGGGCCC ACTCACTCCT
  TGTTGGTGAC CACTCAGGTC AGTATACTAT GTGTTATGAT TCACAGTACC TAATTACAGT
  AATTAGCCAT CTATCTTTAT ATTAAACAAA CCATTTCCTT AAGCTGTTCT TAAAGAATTT
  A
  TAAAAAAAAA AGCCAGTTCT TCACCCAATC TTTGAGAGCA TCTCAGGCAA CCGAAGATTT
  TACAGAATAG TCTCAGTCTA CTTTTCTGAT AAGATCACTC TAATTAGCGT AATCTGATGA
  TTAAATGCCT TTTCAACCTT TAATCAGGAA TTATTTGCAG AGATGAGTAT TTGGGTATGC
  CTGAAGAACT AGTGTTATGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136065955	ENSMUSSNP3416973	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48977993					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148689053 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587239	regulatory region 587239	1302 bp distal