rs48977904 SNP Detail

Summary

• ID
  rs48977904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132783842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGT GGCGCCTACA CACCTGGCAC
  Y
  CGGGGCAAGG GGCTGGCAGG GGGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147480830	ENSMUSSNP3992666	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321338409	CHEV_4_132612446	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48977904					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132783842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			within coordinates
Rr601173	regulatory region 601173			within coordinates
Rr601174	regulatory region 601174			9 bp proximal
Rr601175	regulatory region 601175			577 bp proximal
Rr601176	regulatory region 601176			632 bp proximal
Tssr39445	transcription start site region 39445			1427 bp downstream
Tssr43733	transcription start site region 43733			349 bp upstream