rs48977480 SNP Detail

Summary

• ID
  rs48977480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCCTGG CACATGTCAC
  AGACAAAAGG ATGTAAACTT TACAGAGGTC AAGTGAGTTG CAGGACAGCA TACACCCGGG
  GCCAGATTAG AACCCAAGTT TCTGGAGTCT AAGGTCTATG CCTATGCCCT CCCCTGGCCA
  GAGTTCCTAG GAAGAGAGAA TTCAACCGCA GGGCAAGAAC ACTGTGGCAC TGAGGACCCA
  R
  AGGGGAAGTG GTAACCGGTA CGGAAGGCCA GATCTCCTCT CACTCACTTA TCTGCACCAG
  ACCTCCTCTC ATTCACTCAT CTGCGAAAGT GTGAGAGCAA GAAACCCCAG GCTGGAGCTG
  CAGCTCTTGG GACCTACGTG GGGGTCCCTG CTGGGTCTCC AGATCTGGAT ACAGAATAGC
  CAGGACAAGG CTCCACAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553172	ENSMUSSNP7145955	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48977480					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622701 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	mRNA-UTR
Rr602182	regulatory region 602182	1925 bp distal
Rr602183	regulatory region 602183	within coordinates
Rr602184	regulatory region 602184	15 bp proximal
Rr602185	regulatory region 602185	581 bp proximal
Rr602186	regulatory region 602186	1482 bp proximal
Rr602187	regulatory region 602187	1605 bp proximal
Rr602188	regulatory region 602188	1633 bp proximal
Tssr39650	transcription start site region 39650	195 bp downstream
Tssr39651	transcription start site region 39651	within coordinates
Tssr39652	transcription start site region 39652	24 bp upstream