rs48976217 SNP Detail

Summary

• ID
  rs48976217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17062834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTATGTG CCCACAATTC
  ACCAACGATG CACCCTCCAA AAGCATCAAT GGCTTCTGCT AAGTGCGCCT CACACCGGAT
  CCTTCTCTCG TATTTCAGGC GGTGGCTAAC CCTTCCTCCC CAAAGTTCCT CTCTTTGATA
  CATGGCTTTG ATTCTTTCAC CCTGGTCTTC TCGCCTCCTT TGACTGGCTT TTTAGCTGTC
  Y
  GTGCTGGTCC TGTTCAGCCT GGCTTACTGG TTGTCATCCA GATCTTCTAG TTTACCATCC
  TCTAAGCTGT TCTTGATGCC ACTCATGACT TTTAATTAAT CCAGGTGGGA AGCTAACTTC
  CCCAAGTCAC CATTCCAACA TAGGCCTAAT CTCTAAATGT GTTTCAGCAT CCCAGTTTCA
  AGTCCAATAT ATTCAAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866951	NES15986479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48976217					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866951	NES15986479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17062834 () rs orientation: forward

Symbol	Name	Function Class
Gm15473	predicted gene 15473	within coordinates
Rr626753	regulatory region 626753	461 bp distal
Rr626754	regulatory region 626754	14 bp distal
Rr626755	regulatory region 626755	1693 bp proximal