rs48975071 SNP Detail

Summary

• ID
  rs48975071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41330982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCTGAC TAGTGTCTGC
  TGATACCACG TTCATGTTCT TGCTCTAAAG AGTCATATCA GAAATATGTT TATAGTTCTT
  GTTGGTGTGA TACTAAATTC TCCTGGGCTG AATGGCCTTA AAACCTAAAC TGAGCTCAGG
  GGGTGATACT CCCAGGAAAG CTCAGGGAGG GCAAGGGGAC ACACATACCT AACCCGTTCC
  Y
  TCTCTTTTGT CAACCTTCTT TCTCTCTTCC ATAGAACTAC ATTTTGGACC GAAGTACATC
  CCCATTTGGA GATGTTCTAT TACTTTTCCT AGGGAGATAT GAACAGTTAT CTACTCACCC
  TGGGCAGAAA ACCAATGTCA AACCAAAGAA AAGATTCTAC TCAGGTCCAC TGTGCTGAAC
  TGATGAGTGT ATTGGGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60398372	NES15902920	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48975071					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398372	NES15902920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41330982 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	within coordinates
Rr575939	regulatory region 575939	703 bp distal
Rr575940	regulatory region 575940	272 bp proximal
Rr575941	regulatory region 575941	329 bp proximal
Rr575942	regulatory region 575942	432 bp proximal
Rr575943	regulatory region 575943	1269 bp proximal