rs48972600 SNP Detail

Summary

• ID
  rs48972600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCAAAGC CCCCCTCTGT
  GTCTCTCATT TCCTTCTTCA CAGCATCTGC ATACTGCTAT TCCTCTCTCT AGAGTCCCTT
  CTCCCATCCC ATAAACTATA TTCTAAATGC TCACTCTTGT GTAACAAACT TTGATTAGTC
  TAAAACAGCT ACAAGTTATG GGATATCCTT CCTATATTTA GGTATGCGGC TTCAGTGCTG
  R
  TCCAACACAT ATAGACATCT TTTGAGGGTT CTTGCAAGAT ATTGTTTCTT ATTAAAAAGA
  GTAGCCCTTA GGAGGAAGGC CTTTTTGGTG ACATCCAACT TGCTTCCTTG TTTGAATACA
  ATCATGTGAG TATGTAAAAT TCAGAGCTGT GGAGGGCATG TTGCAACCCC ACATACCACA
  TAACAGAAAT TTGAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60870862	NES15982536	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A		A
ss321765809	CHEV_6_22487067	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48972600					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60870862	NES15982536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537066 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	342 bp proximal
Rr627120	regulatory region 627120	398 bp proximal