rs48966516 SNP Detail

Summary

• ID
  rs48966516
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG AGGCTTGTCT GCTGGTTTGA
  C
  CTAGGAGGTC CCATCTTTAC CATTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135467987	ENSMUSSNP5152896	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320835327	CHEV_3_87552836	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48966516					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656221 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	289 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	82 bp distal
Rr579536	regulatory region 579536	80 bp proximal
Rr579537	regulatory region 579537	288 bp proximal
Tssr33946	transcription start site region 33946	359 bp upstream
Tssr33947	transcription start site region 33947	346 bp upstream
Tssr33948	transcription start site region 33948	316 bp upstream
Tssr33949	transcription start site region 33949	299 bp upstream
Tssr33950	transcription start site region 33950	284 bp upstream