rs48965492 SNP Detail

Summary

• ID
  rs48965492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTCACCCCAT TGGGCCCCTC TACCCTTCTT CTGTCTTGTT
  TTTCAGTACT CTTAAGTTTC CTGCGAGGCT GTTTTGCCTT TGATGGAGTG AGTTTGGGCT
  K
  AGCAGGAGTC TGTGGGGAAG CTCAGACTCC CTCTGGCTCT GCCCAGTGTC CCCTGCCTAG
  AGGGGACTCT GACCATCTGG CCTGGCTCTA TTTTGTCCTC T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147676638	ENSMUSSNP3351231	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48965492					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			188 bp proximal
Rr603269	regulatory region 603269			441 bp proximal
Rr603270	regulatory region 603270			1789 bp proximal