rs48964250 SNP Detail

Summary

• ID
  rs48964250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTAAAG ATTTGAGTAG
  CATGAGCGTC ACACAGTAAG TAAGCTTTTA GACACTGACT GACCTGGTCT CCCACTTTGC
  CTTTATCACT TTATTTAACC CTAATCACAA TTTTATTTAA AAAATATTAA TTTATTGAGA
  TAATAATATA ATTACATCAT TTCCCCTTTT CCTTTCCTTC CCTCTAAACC TTCCCATATA
  Y
  TTCTCTTTGC TCTCTTTCAA GTCCATGGCC TTTTTTTTCC ATTAATTTTT AACATGTATA
  TGTGTTCCAA AATGCAAAAA TACAACCTGC TCAGTCTATG TTACTTGTAT GTATGTTTTT
  AGGGCTGACC ATTTGATCTT AGATAACCAG CTAGTGTGTT CTTCACAGGG GAAGACTATT
  TATTTACCTG TAGTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958545	CHEV_3_127651719	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48964250					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742450 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	220 bp upstream
Rr584909	regulatory region 584909	181 bp distal
Rr584910	regulatory region 584910	72 bp proximal
Rr584911	regulatory region 584911	299 bp proximal
Tssr31619	transcription start site region 31619	1502 bp upstream