rs48960640 SNP Detail

Summary

• ID
  rs48960640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150587436 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A AGCCCCCAGC CCACAGAAAC AAAGTCCTGA TGCCCTTTTG
  CTGAAGCCAA TAGTGTGTCT AGTGTGTCGC TATGCCGAAT TCCACACCCC TAAGCCCCTC
  R
  CCCCATAAAA ACCCCTAGCT TTTGAGCCTC ATGGCCAACA TCCGTTATCT CCTGTGTGGG
  ATGCATGTCG GTCCGGAGCT CCGTAATTAA ATGACTTCAT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148428340	ENSMUSSNP5868364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48960640					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150587436 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	1038 bp proximal
Gm71525	predicted gene, 71525	1292 bp upstream
N4bp2l2	NEDD4 binding protein 2-like 2	Intron
Rr399543	regulatory region 399543	1673 bp upstream
Rr625784	regulatory region 625784	802 bp proximal
Rr625785	regulatory region 625785	1303 bp proximal
Rr625786	regulatory region 625786	1617 bp proximal
Rr625787	regulatory region 625787	1631 bp proximal
Rr625788	regulatory region 625788	1896 bp proximal
Tssr49954	transcription start site region 49954	1326 bp upstream
Tssr54667	transcription start site region 54667	1241 bp downstream
Tssr54668	transcription start site region 54668	1344 bp downstream
Tssr54669	transcription start site region 54669	1446 bp downstream
Tssr54670	transcription start site region 54670	1589 bp downstream