rs48957945 SNP Detail

Summary

• ID
  rs48957945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156956896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGAGGTCC TGTGTTCAAA TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCCGTAATGA GATCTGGTGC CCTCTTCTGG TGCATCTGAA GACAGCTACA
  R
  TGTACTTAGA TATAATAATA AATAAATCTT TAAAAAAAAG TTTTTTACAA GTATATAAAT
  AAAATGTTAG GTCTTCCGGT GCCATCGAAA GGACACTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584248	CHEV_2_156940712	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48957945					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156956896 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	16 bp distal
Rr568436	regulatory region 568436	1978 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27142	transcription start site region 27142	1571 bp upstream
Tssr27143	transcription start site region 27143	650 bp upstream