rs48956066 SNP Detail

Summary

• ID
  rs48956066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17764432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAGGGA CTTCTGCTTG
  TTTTTGAGAT TTGGTAGTAG GAGTAGTGCC GTGTGGGAGC ATGGTGGGCT CTGTACCGGC
  TGCTGTCTGT CCAGCCTCTG TTTTGTACAA GGCATCCATA ATTGTTTGAA ATGGCTTCTC
  CAAGAACACT AGTGAGTAAG CAGGTAGAGG GCCCAGACAT TTAGATGACA ATTAGATCTT
  Y
  GGAAAATCCT GTATACTACC AAACAGGGTT TGGTTCTGCT TCCCATTTAG TGCGTTTAAG
  TAGGTGTTGT GTAATAAAAA CATGCTTTGC ATTGGGTGGG AAAGCCCCAG TTGCTTGAGT
  CTACACCAGT CTAAACTGAG TTCCAGATTC TCTCCGAGAG CTATGAGTCG GTGTGGTGAA
  AGCCAAATTG TCTTTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133022235	ENSMUSSNP1947889	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321756235	CHEV_6_17714433	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48956066					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17764432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626856	regulatory region 626856			within coordinates
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			1548 bp downstream