rs48953504 SNP Detail

Summary

• ID
  rs48953504
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76869273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGGTGT TGTAGTCTGC
  GTGTGCGCGT TGAATCAGCC ACAGGCCTGT GGGACGCAGA GCTAGGAATC CATTCTATGC
  GTGCCTGGGG AGCCACGGGG TAGTGCAAGG TACGGTTCTG TTCCTTCCGG TGTCCTGAAG
  ACGAAAGCGG GCTGAATTCT CCACTACAGA GGACCGCGGA GTCCTTGGCG CGACTACAAA
  K
  CTCCAGGCAG GGTTTGTAGC GTGCGGAAGG CGCATGCGGG GTCTGCTGGG TGGAAGACAA
  GCAGAAGTCT TTGGGATGCA TAGGGGCAGT AGGATAGGTG TGGGACACGG GCTAGTATCT
  GTGGGGTGTC AGGGTCCTTC TGTGAATACA GAGTATAGGT GAGGACCTCA GCGTTACGAG
  CCTCGGGGCA AGAGTCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52375976	NES15271679	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48953504					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52375976	NES15271679	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76869273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			within coordinates
Rr434376	regulatory region 434376			745 bp distal
Rr434377	regulatory region 434377			765 bp distal
Rr434378	regulatory region 434378			161 bp distal
Rr434379	regulatory region 434379			422 bp distal
Rr434380	regulatory region 434380			275 bp distal
Rr434381	regulatory region 434381			within coordinates
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			1184 bp downstream
Tssr94204	transcription start site region 94204			1162 bp downstream
Tssr94205	transcription start site region 94205			692 bp downstream
Tssr94206	transcription start site region 94206			181 bp downstream
Tssr94207	transcription start site region 94207			155 bp downstream
Tssr94208	transcription start site region 94208			138 bp downstream
Tssr94209	transcription start site region 94209			124 bp downstream