rs48949200 SNP Detail

Summary

• ID
  rs48949200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106545430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTGGTTT TCCTGGCTCC CAGGAAAACT CTACTTCCAT
  GTCACGGAGG CCTTTGTAAG GTGACCAGCT AGTGCAGGCA AATGAATTAA TTTTCTTAGC
  R
  AACAGTTCTT TGGCACTTCC TGTTCCCTCT GTAAAGTGAG GGAAGACAGT GGGTGCTGGT
  TACATTCATG TTGGGTTGGT AGCCACCCAG GTCTCATTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147170328	ENSMUSSNP4316968	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48949200					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106545430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mroh7	maestro heat-like repeat family member 7			Intron
				Noncoding-Transcript-Variant
Rr596793	regulatory region 596793			399 bp proximal