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rs48946427 SNP Detail
Summary
  • ID
    rs48946427
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr18:77591531 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTGTCAGGTG TCAGGAGCCT TGTGTAAGCT CACTAGTTGT
    GAACTCCTGC TGATGCCCTC TGAAAACCCA GGACACCCCC AATTCTTGGA GCAAGAACAC
    C
    AGGCTCCTGT CCTTAACCAT ACAATGTGGG CTAGATGTGC CCCAGGCATG GGCAGCCAGA
    TGTGTGCACG CGTGCACGCG CACGTGCGTG CGTGCGTGC                       
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss147551845 ENSMUSSNP175958 ENSEMBL ENSEMBL_Sanger f SNP C C C
ss325701888 CHEV_18_77742574 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs48946427 SNP C C C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:77591531 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Intron
Noncoding-Transcript-Variant
Cpgi10275 CpG island 10275 1289 bp distal
Rr541132 regulatory region 541132 1235 bp distal
Rr541133 regulatory region 541133 1104 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory