rs48946427 SNP Detail

Summary

• ID
  rs48946427
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCAGGTG TCAGGAGCCT TGTGTAAGCT CACTAGTTGT
  GAACTCCTGC TGATGCCCTC TGAAAACCCA GGACACCCCC AATTCTTGGA GCAAGAACAC
  C
  AGGCTCCTGT CCTTAACCAT ACAATGTGGG CTAGATGTGC CCCAGGCATG GGCAGCCAGA
  TGTGTGCACG CGTGCACGCG CACGTGCGTG CGTGCGTGC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147551845	ENSMUSSNP175958	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325701888	CHEV_18_77742574	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48946427					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1289 bp distal
Rr541132	regulatory region 541132			1235 bp distal
Rr541133	regulatory region 541133			1104 bp proximal