rs48946340 SNP Detail

Summary

• ID
  rs48946340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTGAGC GGCACGTGGG
  CCTGGTGGGC TGGCTCGGGC ACAGGCTCGC GTGGGGGACT ACGCTCTGCA GCATCAGCCC
  TGAGTGGCCT GGCAAGCGTG GCGGAGAAAG CCGGGGCCGC GGCTGGGTCC AGCACGTTGT
  GGGCGGAGGA GGCCGCGGCT CGACGCGGGG CGGGAGAGCC GAGGAAGCTC GGGGTGTCGG
  R
  TCGGGCTCCT GTTAGCGGCC CGCGGGAGCT TAGAGGCTGT GGGCTGGATA GCATCGGAGT
  CCGAGTCCAA CCCCGGCCTC CGGGCAGCGG GCCCGATTAC TTGGGCGAGG GGCGGGGAAG
  ACGGATGTGA CCTGCCACCC GGGGCAGCCG AGTGGAAATG GCCCTCCACC TGGTGGCCGG
  GTTTCAGGGA CGAGGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148080850	ENSMUSSNP5667150	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321434197	CHEV_4_151700233	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48946340					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430083M05Rik	RIKEN cDNA 9430083M05 gene			1399 bp upstream
Cpgi15411	CpG island 15411			within coordinates
Rpl22	ribosomal protein L22			Intron
				Noncoding-Transcript-Variant
Rr398901	regulatory region 398901			278 bp downstream
Rr605841	regulatory region 605841			245 bp distal
Rr605842	regulatory region 605842			within coordinates
Rr605843	regulatory region 605843			160 bp proximal
Tssr40547	transcription start site region 40547			248 bp downstream