rs48944493 SNP Detail

Summary

• ID
  rs48944493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAAGGGCACA TCTCCTATCA GAAAGTTATA TGCCTTACTT
  CTCCTTTAAC CTAGGTACCC CCATGCACCC ATTGTCCAAC AATAGTTACT AAAATATGTG
  R
  GATCACTTAT TTTAAGTCTT CTTCTTCTTC TTCTTCTTTT TTTTTTTGAT TTTTCAAGAC
  AGGGTTTCTC TGGGTAGCCC TAGCTGTCCT GGAACTCACT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134667134	ENSMUSSNP2001004	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48944493					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402285 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	819 bp downstream
Rr397615	regulatory region 397615	1921 bp upstream
Rr573976	regulatory region 573976	124 bp proximal
Rr573977	regulatory region 573977	1768 bp proximal