rs48941164 SNP Detail

Summary

• ID
  rs48941164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153388049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGCCAA GTCTCCCCTG
  GGCACTTGCA GGACCCCCTC AGACATCAGA TTGATCACTC ATTCCATTTT AGGCACAATA
  TTGGTGGCTA GTCCTTTCTG AGAGCACAGT GCCTTCTGCC CTGTGTTTGG CCCATTATGA
  AACCTGTGGC CTGCTAGCAA GTGCCTAGGG CCAAGGCCAT TTGTCAAGTG CTGATTTGTC
  Y
  CTCAGAGTAG TGTCACCACC ATCCCTCATA TCACCCACGG GCCAGCTCTG GTTCCCTGAA
  GCATCTCTCG GTCTCCCGCC TTCCACTTGG CCTTGCCCTC TGTACTCTAT GGCGCTGGTG
  TCTTCAGGAC GATGTTCCCA GTCAGAGTAG CACGGAACCC TTTCCTTCTG GCTGTTTCTG
  TACCCCCATG AGGAGGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147996116	ENSMUSSNP7235318	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48941164					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153388049 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1107 bp upstream
Gm75218	predicted gene, 75218	1467 bp downstream
Rr567675	regulatory region 567675	1848 bp distal
Rr567676	regulatory region 567676	1009 bp distal
Rr567677	regulatory region 567677	617 bp proximal
Rr567678	regulatory region 567678	1118 bp proximal