rs48939892 SNP Detail

Summary

• ID
  rs48939892
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4464014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGATAT CCTTAATGAA
  GCGTGCCTCT TTAGAAAGTT TTTGGCCCAT TTCTATAAGA CGGAGAAATG TTAACTTACC
  GAGGATGACT TTCTCTCACG AGCGGTGAGA ACACTCCTCA AAACGACTTC ATTGTGGTGA
  CCTTCTAAGG AAAATGGGCT CTGTCCAGCG AGGGTCCGTA CCTCGGGTCC CACATTTGGG
  C
  GCCACTTGTC TCGACCCACG GGACCCAGTT ATAAGGGGGT CCAAGGGGAC CATGCCTGAA
  AGAGAAACGG GTGGGAAAGA AGGAGGAGAC AAAGTAGATG ATCCTATCAA GGTCTGTTTA
  TTGTGAGCAA GGTTACAGAA TATAAGCAGT AAGAAGGAGG AAGGAGGTAA AGAGGGAGAA
  ACTTGCCCCT GCCTCAGCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145948736	ENSMUSSNP6199689	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48939892					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4464014 () rs orientation: forward

Symbol	Name	Function Class
Rr588287	regulatory region 588287	152 bp proximal
Tssr40838	transcription start site region 40838	112 bp downstream