rs48938230 SNP Detail

Summary

• ID
  rs48938230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139363659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTCCCT CTGGCTCTGC
  CCAGTGTCCC CTGCCTAGAG GGGACTCTGA CCATCTGGCC TGGCTCTATT TTGTCCTCTA
  AGGGGCTTCC TGGAATTCCA GGCTCAGAAG GGCCATTCTG CCCCAGTCTG GAGCTGTGTG
  TGTGGTGTCA GTTATAGTTA AAGCTCAGGC CGCAGTGGGC TGTTAATTGT ATATTTACTG
  Y
  CCATGTGAGA GGTGTCTTGC TTGATATTCA TCTTTAAGTT GTCAAATGAA AAATGGGATT
  TTGAGAAATG GTTTTGTAGA GTGAGCAGCA CACTGCACTG AGGACGGAGT CATGGAGAGA
  GGTTTAGTCT GCTCCAGGAA ATGCTCACCT GAATTCCTTA AGAATTAACA GCCACCAAAA
  CCCCAGGCTG CCCACCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147676653	ENSMUSSNP4077171	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48938230					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139363659 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aldh4a1	aldehyde dehydrogenase 4 family, member A1			Intron
				Noncoding-Transcript-Variant
Gm21969	predicted gene 21969			Intron
Rr603268	regulatory region 603268			within coordinates
Rr603269	regulatory region 603269			218 bp proximal
Rr603270	regulatory region 603270			1566 bp proximal