rs48933836 SNP Detail

Summary

• ID
  rs48933836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGGGGAT CCTAGTGCTC TGGGAAACTG CGACATCAGG
  AGAGGTTAGA AAGGTATTGA AGGGCAGGCT AGCCCCAGTG CCAGGAGCCA TTAGGCGATG
  Y
  GGCTAGTCTA GACCAAGATG TGTGCCAAGT GTAAAACGCC TTCCAGATTT TGGAGACTCA
  GTGGGAAGAG AGAAAGTTAA ATATTTTTAT ATTGTTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133558916	ENSMUSSNP1904035	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48933836					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186841 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	828 bp upstream
Rr636307	regulatory region 636307	938 bp distal
Rr636308	regulatory region 636308	899 bp distal
Rr636309	regulatory region 636309	313 bp proximal
Rr636310	regulatory region 636310	814 bp proximal
Rr636311	regulatory region 636311	1274 bp proximal