rs48931920 SNP Detail

Summary

• ID
  rs48931920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135592121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTGGCACAAG GCAGGGTGAT TATTAAGTCC AAGATCGTCA
  TTAGTTACAT AGTGACATAG TGACATAGTA GGGCAGCCTG GGCTAAGCAA GAAACAACAA
  M
  GTAAAACATG GCATACTTAA AAATACTATG AGATAAGAGG AACAATAGCA TATCTAATGG
  GGATGAAGCA GAATATAGTA TAGTATAGTA TAGTATAGTA T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135929715	ENSMUSSNP3981399	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48931920					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135592121 () rs orientation: forward

Symbol	Name	Function Class
Rr585796	regulatory region 585796	within coordinates
Rr585797	regulatory region 585797	401 bp proximal
Slc39a8	solute carrier family 39 (metal ion transporter), member 8	Intron
Tssr31861	transcription start site region 31861	713 bp upstream
Tssr31862	transcription start site region 31862	836 bp upstream