rs48927807 SNP Detail

Summary

• ID
  rs48927807
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15257790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAAAAGAC ATTTTTTAGC ACAGCCTGGA AGTTCTCAGT
  CACAGACAGT GACTCCTGGG ATGTTTCTTT GCATTTATAG ATTAAGTGTA TTTCTTGAAG
  W
  GTTAAGACTA GAAAACAAAC AAACAAACAA ACAAACAAAC AAACAAAACT AAAAATGACC
  TGAAAGAACA TCCAAAGACT CTCCTTTCCT TTCAGCTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134620080	ENSMUSSNP5247681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48927807					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15257790 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	1526 bp proximal
Rr573762	regulatory region 573762	1676 bp proximal
Rr573763	regulatory region 573763	1829 bp proximal