rs48925270 SNP Detail

Summary

• ID
  rs48925270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAAGTG GAAGACCTTC
  CACAATAACG GAAAGTTTCA CTACTATTCA GTGTTTTGTG AACACCCTTT CAAGGCCTCT
  CTCAAATGTG CCATAAGTGT GCTTCGGGTT AAGCCCAGTC CAGCCAGCAG CACAGAGCGG
  CACTGACGAG CCACTGCTCT CTGGACTGGG GAGGAGGCGT GCTGCCCTCT AGTGACTCAA
  Y
  AGCACAGACT GGGGAGGAGG CGTGCTGCCC TCTAGTGACA ACAGCACAGT CAACAAGAAG
  CCCCTCAGAG GTAGGAAATG TCCATGCTGT TAGGAAAGAA CTGACCCAAG CCTTCATCTC
  ATTGAGGAAA CATAACGTCC ATCCATGAAA TGTGGTTACA CATCTGCTGT AACTAAGCCA
  AGGGTCAGAT GTCGGTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136102266	ENSMUSSNP2959478	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48925270					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			565 bp distal
Rr587524	regulatory region 587524			within coordinates
Rr587525	regulatory region 587525			1 bp distal
Rr587526	regulatory region 587526			22 bp proximal
Rr587527	regulatory region 587527			441 bp proximal
Rr587528	regulatory region 587528			733 bp proximal