rs48924642 SNP Detail

Summary

• ID
  rs48924642
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108424271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCTTCT TTGTAGAAAG
  TGTTGACACA CATCTACTCC CTTTGGATGG AGTGTGAAAA CTCAGTCTTG TCTTGAGGAT
  CAGGCCACTG GGGACCTCAG CTCTCCAGAA ATCCTGGATT TAATTGGCCA TACTGTCAAA
  AGATTTTGTC AGAAGGAAAC CAGAACCAAT GCCACAGGAA CACTTGCTCG GCCCTCTTGT
  S
  CTGAAACCCC CATCACTGAC CTCTCAGCAC CTGGATCCCT GAAAACTGCC AGAAGTCAAG
  GTTCAACTGT CCTAGTGTAG TGTAATAGAC TTGGAGGAAC CCTGTCCCTA AGGCTTTCAG
  AACTTTCTTT CTCTTCCAAG GCTTCTCTCA TGGTGGTAAC TCTCCTGCCT GGGGCCTTCA
  AAGCAGCTCT GTTTACAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133502592	ENSMUSSNP7238005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321892715	CHEV_6_108397304	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48924642					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108424271 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	1920 bp distal
Rr636108	regulatory region 636108	238 bp distal
Rr636109	regulatory region 636109	within coordinates